pH-sensing mechanism points to how beneficial gut bacteria optimise host colonisation and biofilm formation

9th March 2018

Scientists on the Norwich Research Park have discovered a key mechanism by which gut bacteria colonise and adhere to their specific hosts.

The finding may lead to new, improved probiotics with optimised abilities to colonise our gut and battle infections by forming strong associations with the host as biofilms. It also helps our understanding of how the vast community of microbes in our gut, known as the microbiota, establishes a durable and specific relationship with the host, that helps to keep us healthy.

This new study builds from previous work in Dr Nathalie Juge’s group at the Quadram Institute. Funded by the Biotechnology and Biological Sciences Research Council, researchers in the Juge Group use Lactobacillus reuteri bacteria, which are a common member of the gut microbiota in many different animals, as a model to study how gut commensal bacteria adapt to their host organism.

Lactobacillus reuteri in a biofilm

Lactobacillus reuteri in a biofilm

They had previously identified a key protein used by bacteria to attach themselves to the gut surfaces. Known as SRRP (Serine Rich Repeat Protein) this class of adherence proteins or adhesins, has been identified as being involved in infection and biofilm formation in disease-causing bacteria. Biofilms form when groups of microbes come together on a surface. The researchers previously discovered that SRRP was also produced in non-pathogenic species, such as Lactobacillus, where they are vital for biofilm formation in the gut of mice*.

In this new collaborative study with the University of East Anglia and published in the Proceedings of the National Academy of Sciences, the team of researchers working on this study obtained structural and biochemical information on how this adhesin binds to the host and identified unique features in the region used for binding. By working out the structure of these features and running computer simulations, the team was able to show that the binding region underwent a change in its conformation depending on the pH. This impacts on its ability to bind to different components in the gut.

As the pH within the gut changes as you move through the system, and deeper into the mucus layer that lines the gut, this may be part of the mechanism used by bacteria to adapt to their environment within the gut.

Having identified the pivotal role for this feature in defining  the association of these beneficial bacteria to the gut, they can now exploit this knowledge as a novel strategy to fight against pathogen biofilms  and  for the design of probiotics well adapted to their host where their benefits can be realised fully.

 

Reference: Structural basis for the role of serine-rich repeat proteins from Lactobacillus reuteri in gut microbe–host interactions, Saannya Sequeira, Devon Kavanaugh, Donald A. MacKenzie, Tanja Šuligoj, Samuel Walpole, Charlotte Leclaire, A. Patrick Gunning, Dimitrios Latousakis, William G. T. Willats, Jesus Angulo, Changjiang Dong and Nathalie Juge, PNAS 2018 https://doi.org/10.1073/pnas.1715016115

*PLOS Genetics https://doi.org/10.1371/journal.pgen.1004057

Related Targets

Biofilms

Targeting the understanding of the microbiome

Understanding the Microbiome

Related Research Groups

Juge group

Juge group

Related Research Areas

Research area: microbes and health

Gut Microbes & Health