Scientific Publications

Weinberger V, Darnhofer B, Thapa HB, Mertelj P, Stentz R, Jones E, Grabmann G, Mohammadzadeh R, Shinde T, Karner C, Ober J, Juodeikis R, Pernitsch D, Hingerl K, Zurabishvili T, Kumpitsch C, Kuehnast T, Rinner B, Strohmaier H, Kolb D, Gotts K, Weichhart T, Köcher T, Köfeler H, Carding S, Schild S, Moissl-Eichinger C. (2025)

Proteomic and Metabolomic Profiling of Archaeal Extracellular Vesicles from the Human Gut

Nature Communications, Article number: 5094 (2025)

Zhernakova A, Yassour M, Hall LJ, Collado MC. (2025)

Unlocking the power of human milk and infant feeding: Understanding how nutrition and early microbiota interaction shapes health programming.

Cell host & microbe

Lamberte L, Darby E, Kie R, Moran R, Acuna-Gonzalez A, Sim K, Shaw A, Kroll S, Belteki G, Clarke P, Felgate H, Webber M, Rowe W, Hall L, Van Schaik W. (2025)

Staphylococcus haemolyticus is a reservoir of antibiotic resistance genes in the preterm infant gut

Gut Microbes, Gut Microbes KGMI

Carding SR, Purse C, Parker A, Baker D, Moss C, Evans R, James S, Durham J, Funnell SGP. (2025)

Intestinal microbiota profiles of captive-bred cynomolgus macaques reveal influence of biogeography and age

Animal Microbiomes, 7, 47

Galperina A, Lugli GA, Milani C, De Vos W, Salonen A, Hurwitz B, Ponsero A. (2025)

The Aggregated Gut Viral Catalogue (AVrC): A unified resource for exploring the viral diversity of the human gut

Plos Computational Biology

Shehata E, Percival J, Philo M, Needs PAUL, Clifford MICAEL, Kroon PAUL. (2025)

Aerobic in vitro studies of spontaneous anthocyanin degradation are not useful models for anthocyanin breakdown in the human colon

Food Chemistry, 486, 144614

Romano S, Wirbel J, Ansorge R, Schudoma C, Ducarmon QR, Narbad A, Zeller G. (2025)

Machine learning-based meta-analysis reveals gut microbiome alterations associated with Parkinson’s disease.

Nature communications

Charity OJ, Thilliez G, Al-Khanaq H, Acton L, Kolenda R, Bawn M, Petrovska L, Kingsley RA. (2025)

Reversible excision of the wzy locus in Salmonella Typhimurium may aid recovery following phage predation.

PLoS genetics

Bloomfield S, Palau P, Janecko N, Baker-Austin C, Mather AE. (2025)

Association of antimicrobial resistant Vibrio and species pathogenic to humans with aquacultured seafood

Food Microbiology

Metris A, Walker AW, Showering A, Doolan A, McBain AJ, Ampatzoglou A, Murphy B, O'Neill C, Shortt C, Darby EM, Aldis G, Hillebrand GG, Brown HL, Browne HP, Tiesman JP, Leng J, Lahti L, Jakubovics NS, Hasselwander O, Finn RD, Klamert S, Korcsmaros T, Hall LJ. (2025)

Assessing the safety of microbiome perturbations.

Microbial genomics