Dr Clémence Frioux

Researcher

Contact via email

Microbial Genomes, Strains and Evolution

Links/websites:

frioux.github.io

ORCID

I am a postdoctoral researcher in Falk Hildebrand’s group, working in computational biology. My research focuses on the human gut microbiota and the study of the interactions within it. I have a computer science PhD from University of Rennes, France. During this postdoc I will make links between metagenomics and systems biology, to better understand the role and functions of gut bacteria in health and disease.

Key Publications

Frioux, C., Schaub, T., Schellhorn, S., Siegel, A., & Wanko, P. (2019). Hybrid metabolic network completion. Theory and Practice of Logic Programming, 19(01), 83–108. https://doi.org/10.1017/S1471068418000455

Frioux, C., Fremy, E., Trottier, C., & Siegel, A. (2018). Scalable and exhaustive screening of metabolic functions carried out by microbial consortia. Bioinformatics, 34(17), i934–i943. https://doi.org/10.1093/bioinformatics/bty588

Aite, M., Chevallier, M., Frioux, C., Trottier, C., Got, J., Cortés, M. P., … Siegel, A. (2018). Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models. PLoS Computational Biology, 14(5), e1006146. https://doi.org/10.1371/journal.pcbi.1006146

Prigent, S., Frioux, C., Dittami, S. M., Thiele, S., Larhlimi, A., Collet, G., … Siegel, A. (2017). Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLOS Computational Biology, 13(1), e1005276. https://doi.org/10.1371/journal.pcbi.1005276

Laniau, J., Frioux, C., Nicolas, J., Baroukh, C., Cortes, M.-P. M.-P., Got, J., … Siegel, A. (2017). Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks. PeerJ, 5(10), e3860. https://doi.org/10.7717/peerj.3860