Dave Baker

Head of Sequencing

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I am responsible for all core sequencing in Quadram Institute Bioscience. I have been on the Norwich Research Park for over 25 years, working at the Sainsbury Laboratory, John Innes Centre and Earlham Institute, running and maintaining core genomics services.

Moreno Gonzalez M, Hampton K, Ruiz P, Beasy G, Nagies F, Parker A, Lazenby J, Bone C, Alava-Arteaga A, Patel M, Hellmich C, Luri-Martin P, Silan E, Baker D, Philo M, Rushbrook S, Hildebrand F, Rushworth S, Beraza N. (2024)

Regulation of intestinal senescence during cholestatic liver disease modulates barrier function and liver disease progression

JHEP Reports, 6, 101159


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Djeghout B, Le Viet T, De Oliveira Martins L, Savva MS, Evans R, Baker D, Page A, Elumogo N, Wain J, Janecko N. (2024)

Capturing clinically relevant Campylobacter attributes through direct whole genome sequencing of stool

Microbiol Genomics


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Mills RO, Dadzie I, Le-Viet T, Baker DJ, Addy HPK, Akwetey SA, Donkoh IE, Quansah E, Semanshia PS, Morgan J, Mensah A, Adade NE, Ampah EO, Owusu E, Mwintige P, Amoako EO, Spadar A, Holt KE, Foster-Nyarko . (2024)

Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana.

The Journal of antimicrobial chemotherapy


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Cook R, Telatin A, Hsieh E, Newberry F, Tariq M, Baker D, Carding S, Adriaenssens . (2024)

Nanopore and Illumina sequencing reveal different viral populations from human gut samples

Microbial Genomics


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Sánchez C, Garde S, Landete JM, Calzada J, Baker DJ, Evans R, Narbad A, Mayer MJ, Ávila . (2024)

Identification, activity and delivery of new LysFA67 endolysin to target cheese spoilage Clostridium tyrobutyricum.

Food microbiology


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Cotton S, McHugh MP, Dewar R, Haas JG, Templeton K, Robson SC, Connor TR, Loman NJ, Golubchik T, Martinez Nunez, Bonsall D, Rambaut A, Snell LB, Livett R, Ludden C, Corden S, Nastouli E, Nebbia G, Johnston I, Prieto JA, Saeed K, Jackson DK, Houlihan C, Frampton D, Hamilton WL, Witney AA, Bucca G, Pope CF, Moore C, Thomson EC, Cutino-Moguel T, Harrison EM, Smith CP, Rogan F, Beckwith SM, Murray A, Singleton D, Eastick K, Sheridan LA, Randell P, Jackson LM, Ariani CV, Gonçalves S, Fairley DJ, Loose MW, Watkins J, Moses S, Nicholls S, Bull M, Amato R, Smith DL, Aanensen DM, Barrett JC, Kele B, Aggarwal D, Shepherd JG, Curran MD, Parmar S, Parker MD, Williams C, Glaysher S, Underwood AP, Bashton M, Pacchiarini N, Loveson KF, Byott M, Carabelli AM, Templeton KE, Peacock SJ, de Silva, Wang D, Langford CF, Sillitoe J, Gunson RN, Cottrell S, O'Grady J, Kwiatkowski D, Lillie PJ, Cortes N, Moore N, Thomas C, Burns PJ, Mahungu TW, Liggett S, Beckett AH, Holden MT, Levett LJ, Osman H, Hassan-Ibrahim MO, Simpson DA, Chand M, Gupta RK, Darby AC, Paterson S, Pybus OG, Volz EM, de Angelis, Robertson DL, Page AJ, Martincorena I, Aigrain L, Bassett AR, Wong N, Taha Y, Erkiert MJ, Spencer Chapman, Dewar R, McHugh MP, Mookerjee S, Aplin S, Harvey M, Sass T, Umpleby H, Wheeler H, McKenna JP, Warne B, Taylor JF, Chaudhry Y, Izuagbe R, Jahun AS, Young GR, McMurray C, McCann CM, Nelson A, Elliott S, Lowe H, Price A, Crown MR, Rey S, Roy S, Temperton B, Shaaban S, Hesketh AR, Laing KG, Monahan IM, Heaney J, Pelosi E, Silviera S, Wilson-Davies E, Fryer H, Adams H, du Plessis, Johnson R, Harvey WT, Hughes J, Orton RJ, Spurgin LG, Bourgeois Y, Ruis C, O'Toole Á, Gourtovaia M, Sanderson T, Fraser C, Edgeworth J, Breuer J, Michell SL, Todd JA, John M, Buck D, Gajee K, Kay GL, Heyburn D, Charalampous T, Alcolea-Medina A, Kitchman K, McNal A, Pritch DT, Dervisevic S, Muir P, Robinson E, Vipond BB, Ramadan NA, Jeanes C, Weldon D, Catalan J, Jones N, da Silva, Williams C, Fuchs M, Miskelly J, Jeffries AR, Oliver K, Park NR, Ash A, Koshy C, Barrow M, Buchan SL, Mantzouratou A, Clark G, Holmes CW, Campbell S, Davis T, Tan NK, Brown JR, Harris KA, Kidd SP, Grant PR, Xu-McCrae L, Cox A, Madona P, Pond M, Randell PA, Withell KT, Williams C, Graham C, Denton-Smith R, Swindells E, Turnbull R, Sloan TJ, Bosworth A, Hutchings S, Pymont HM, Casey A, Ratcliffe L, Jones CR, Knight BA, Haque T, Hart J, Irish-Tavares D, Witele E, Mower C, Watson DipHE, Collins J, Eltringham G, Crudgington D, Macklin B, Iturriza-Gomara M, Lucaci AO, McClure PC, Carlile M, Holmes N, Moore C, Storey N, Rooke S, Yebra G, Craine N, Perry M, Alikhan NF, Bridgett S, Cook KF, Fearn C, Goudarzi S, Lyons RA, Williams T, Haldenby ST, Durham J, Leonard S, Davies RM, Batra R, Blane B, Spyer MJ, Smith P, Yavus M, Williams RJ, Mahanama AI, Samaraweera B, Girgis ST, Hansford SE, Green A, Beaver C, Bellis KL, Dorman MJ, Kay S, Prestwood L, Rajatileka S, Quick J, Poplawski R, Reynolds N, Mack A, Morriss A, Whalley T, Patel B, Georgana I, Hosmillo M, Pinckert ML, Stockton J, Henderson JH, Hollis A, Stanley W, Yew WC, Myers R, Thornton A, Adams A, Annett T, Asad H, Birchley A, Coombes J, Evans JM, Fina L, Gatica-Wilcox B, Gilbert L, Graham L, Hey J, Hilvers E, Jones S, Jones H, Kumziene-Summerhayes S, McKerr C, Powell J, Pugh G, Taylor S, Trotter AJ, Williams CA, Kermack LM, Foulkes BH, Gallis M, Hornsby HR, Louka SF, Pohare M, Wolverson P, Zhang P, MacIntyre-Cockett G, Trebes A, Moll RJ, Ferguson L, Goldstein EJ, Maclean A, Tomb R, Starinskij I, Thomson L, Southgate J, Kraemer MU, Raghwani J, Zarebski AE, Boyd O, Geidelberg L, Illingworth CJ, Jackson C, Pascall D, Vattipally S, Freeman TM, Hsu SN, Lindsey BB, James K, Lewis K, Tonkin-Hill G, Tovar-Corona JM, Cox M, Abudahab K, Menegazzo M, Taylor BE, Yeats CA, Mukaddas A, Wright DW, de Oliveira Martins L, Colquhoun R, Hill V, Jackson B, McCrone JT, Medd N, Scher E, Keatley JP, Curran T, Morgan S, Maxwell P, Smith K, Eldirdiri S, Kenyon A, Holmes AH, Price JR, Wyatt T, Mather AE, Skvortsov T, Hartley JA, Guest M, Kitchen C, Merrick I, Munn R, Bertolusso B, Lynch J, Vernet G, Kirk S, Wastnedge E, Stanley R, Idle G, Bradley DT, Killough NF, Poyner J, Mori M, Jones O, Wright V, Brooks E, Churcher CM, Delgado Callico, Fragakis M, Galai K, Jermy A, Judges S, Markov A, McManus GM, Smith KS, Thomas-McEwen PM, Westwick E, Attwood SW, Bolt F, Davies A, De Lacy, Downing F, Edwards S, Meadows L, Jeremiah S, Smith N, Foulser L, Patel A, Berry L, Boswell T, Fleming VM, Howson-Wells HC, Joseph A, Khakh M, Lister MM, Bird PW, Fallon K, Helmer T, McMurray CL, Odedra M, Shaw J, Tang JW, Willford NJ, Blakey V, Raviprakash V, Sheriff N, Williams LA, Feltwell T, Bedford L, Cargill JS, Hughes W, Moore J, Stonehouse S, Atkinson L, Lee JC, Shah D, Ohemeng-Kumi N, Ramble J, Sehmi J, Williams R, Chatterton W, Pusok M, Everson W, Castigador A, Macnaughton E, El Bouzidi, Lampejo T, Sudhanva M, Breen C, Sluga G, Ahmad SS, George RP, Machin NW, Binns D, James V, Blacow R, Coupland L, Smith L, Barton E, Padgett D, Scott G, Cross A, Mirfenderesky M, Greenaway J, Cole K, Clarke P, Duckworth N, Walsh S, Bicknell K, Impey R, Wyllie S, Hopes R, Bishop C, Chalker V, Harrison I, Gifford L, Molnar Z, Auckland C, Evans C, Johnson K, Partridge DG, Raza M, Baker P, Bonner S, Essex S, Murray LJ, Lawton AI, Burton-Fanning S, Payne BA, Waugh S, Gomes AN, Kimuli M, Murray DR, Ashfield P, Dobie D, Ashford F, Best A, Crawford L, Cumley N, Mayhew M, Megram O, Mirza J, Moles-Garcia E, Percival B, Driscoll M, Ensell L, Lowe HL, Maftei L, Mondani M, Chaloner NJ, Cogger BJ, Easton LJ, Huckson H, Lewis J, Lowdon S, Malone CS, Munemo F, Mutingwende M, Nicodemi R, Podplomyk Fd, Somassa T, Beggs A, Richter A, Cormie C, Dias J, Forrest S, Higginson EE, Maes M, Young J, Davidson RK, Jackson KA, Keeley AJ, Ball J, Byaruhanga T, Chappell JG, Dey J, Hill JD, Park EJ, Fanaie A, Hilson RA, Yaze G, Lo S, Afifi S, Beer R, Maksimovic J, McCluggage K, Spellman K, Bresner C, Fuller W, Marchbank A, Workma T, Shelest E, Debebe J, Sang F, Francois S, Gutierrez B, Vasylyeva TI, Flaviani F, Ragonnet-Cronin M, Smollett KL, Broos A, Mair D, Nichols J, Nomikou K, Tong L, Tsatsani I, O'Brien S, Rushton S, Sanderson R, Perkins J, Cotton S, Gallagher A, Allara E, Pearson C, Bibby D, Dabrer G, Ellaby N, Gallagher E, Hubb J, Lackenby A, Lee D, Manesis N, Mbisa T, Platt S, Twohig KA, Morgan M, Aydin A, Baker DJ, Foster-Nyarko E, Prosolek SJ, Rudder S, Baxter C, Carvalho SF, Lavin D, Mariappan A, Radulescu C, Singh A, Tang M, Morcrette H, Bayzid N, Cotic M, Balcazar CE, Gallagher MD, Maloney D, Stanton TD, Williamson KA, Manley R, Michelsen ML, Sambles CM, Studholme DJ, Warwick-Dugdale J, Eccles R, Gemmell M, Gregory R, Hughes M, Nelson C, Rainbow L, Vamos EE, Webster HJ, Whitehead M, Wierzbicki C, Angyal A, Green LR, Whiteley M, Betteridge E, Bronner IF, Farr BW, Goodwin S, Lensing SV, McCarthy SA, Quail MA, Rajan D, Redshaw NM, Scott C, Shirley L, Thurston SA, Rowe W, Gaskin A, Le Viet T, Bonfield J, Liddle J, Whitwham . (2023)

Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes.

The Journal of hospital infection


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Juodeikis R, Martins C, Saalbach G, Defernez M, Warren M, Carding S, Koev T, Baker . (2023)

Differential temporal release and lipoprotein loading in B. thetaiotaomicron bacterial extracellular vesicles

Journal of Extracellular Vesicles


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