Acton L, Pye HV, Thilliez G, Kolenda R, Matthews M, Turner AK, Yasir M, Holden E, Al-Khanaq H, Webber M, Adriaenssens EM, Kingsley . (2024)

Collateral sensitivity increases the efficacy of a rationally designed bacteriophage combination to control Salmonella enterica

Journal of Virology

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Holden ER, Yasir M, Turner AK, Charles IG, Webber M. (2022)

Comparison of the genetic basis of biofilm formation between Salmonella Typhimurium and Escherichia coli.

Microbial genomics

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Volz E,Hill V,McCrone JT,Price A,Jorgensen D,O'Toole Á,Southgate J,Johnson R,Jackson B,Nascimento FF,Rey SM,Nicholls SM,Colquhoun RM,da Silva,Shepherd J,Pascall DJ,Shah R,Jesudason N,Li K,Jarrett R,Pacchiarini N,Bull M,Geidelberg L,Siveroni I,Goodfellow I,Loman NJ,Pybus OG,Robertson DL,Thomson EC,Rambaut A,Connor TR,Koshy C,Wise E,Cortes N,Lynch J,Kidd S,Mori M,Fairley DJ,Curran T,McKenna JP,Adams H,Fraser C,Golubchik T,Bonsall D,Moore C,Caddy SL,Khokhar FA,Wantoch M,Reynolds N,Warne B,Maksimovic J,Spellman K,McCluggage K,John M,Beer R,Afifi S,Morgan S,Marchbank A,Price A,Kitchen C,Gulliver H,Merrick I,Southgate J,Guest M,Munn R,Workman T,Connor TR,Fuller W,Bresner C,Snell LB,Charalampous T,Nebbia G,Batra R,Edgeworth J,Robson SC,Beckett A,Loveson KF,Aanensen DM,Underwood AP,Yeats CA,Abudahab K,Taylor BEW,Menegazzo M,Clark G,Smith W,Khakh M,Fleming VM,Lister MM,Howson-Wells HC,Berry L,Boswell T,Joseph A,Willingham I,Bird P,Helmer T,Fallon K,Holmes C,Tang J,Raviprakash V,Campbell 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D,Freeman TM,Parker MD,Keeley AJ,Parsons PJ,Tucker RM,Brown R,Wyles M,Constantinidou C,Unnikrishnan M,Ott S,Cheng JKJ,Bridgewater HE,Frost LR,Taylor-Joyce G,Stark R,Baxter L,Alam MT,Brown PE,McClure PC,Chappell JG,Tsoleridis T,Ball J,Gramatopoulos D,Buck D,Todd JA,Green A,Trebes A,MacIntyre-Cockett G,de Cesare,Langford C,Alderton A,Amato R,Goncalves S,Jackson DK,Johnston I,Sillitoe J,Palmer S,Lawniczak M,Berriman M,Danesh J,Livett R,Shirley L,Farr B,Quail M,Thurston S,Park N,Betteridge E,Weldon D,Goodwin S,Nelson R,Beaver C,Letchford L,Jackson DA,Foulser L,McMinn L,Prestwood L,Kay S,Kane L,Dorman MJ,Martincorena I,Puethe C,Keatley JP,Tonkin-Hill G,Smith C,Jamrozy D,Beale MA,Patel M,Ariani C,Spencer-Chapman M,Drury E,Lo S,Rajatileka S,Scott C,James K,Buddenborg SK,Berger DJ,Patel G,Garcia-Casado MV,Dibling T,McGuigan S,Rogers HA,Hunter AD,Souster E,Neaverson AS. 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Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.

Cell

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Sarwar MB, Yasir M, Alikhan NF, Afzal N, de Oliveira Martins L, Le Viet, Trotter AJ, Prosolek SJ, Kay GL, Foster-Nyarko E, Rudder S, Baker DJ, Muntaha ST, Roman M, Webber MA, Shafiq A, Shabbir B, Akram J, Page AJ, Jahan . (2021)

SARS-CoV-2 variants of concern dominate in Lahore, Pakistan in April 2021.

Microbial genomics

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HOLDEN ERH, WEBBER MAW, YASIR MY, TURNER AKT, WAIN JW, CHARLES IGC. (2021)

Massively parallel transposon mutagenesis identifies temporally essential genes for biofilm formation in Escherichia coli

Microbial Genomics

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Atkinson L, Baker P, Ball J, Barton E, Beale MA, Beaver C, Beggs A, Bell A, Berger DJ, Berry L, Bewshea CM, Bicknell K, Bird P, Bishop C, Boswell T, Breen C, Buddenborg SK, Burton-Fanning S, Chalker V, Chappell JG, Charalampous T, Cormie C, Cortes N, Coupland LJ, Cowell A, Davidson RK, Dias J, Diaz M, Dibling T, Dorman MJ, Duckworth N, Elliott S, Essex S, Fallon K, Feltwell T, Fleming VM, Forrest S, Foulser L, Garcia-Casado MV, Gavriil A, George RP, Gifford L, Gill HK, Greenaway J, Griffith L, Gutierrez AV, Hale AD, Haque T, Harper KL, Harrison I, Heaney J, Helmer T, Higginson EE, Hopes R, Howson-Wells HC, Hunter AD, Impey R, Irish-Tavares D, Jackson DA, Jackson KA, Joseph A, Kane L, Kay S, Kermack LM, Khakh M, Kidd SP, Kolyva A, Lee JC, Letchford L, Levene N, Levett L, Lister MM, Lloyd A, Loh J, Macfarlane-Smith LR, Machin NW, Maes M, McGuigan S, McMinn L, Mestek-Boukhibar L, Molnar Z, Monaghan L, Moore C, Naydenova P, Neaverson AS, Nelson R, Niebel MO, O'Toole E, Padgett D, Patel G, Payne BA, Prestwood L, Raviprakash V, Reynolds N, Richter A, Robinson E, Rogers HA, Rowan A, Scott G, Shah D, Sheriff N, Sluga G, Souster E, Spencer-Chapman M, Sridhar S, Swingler T, Tang J, Taylor GP, Tsoleridis T, Turtle L, Walsh S, Wantoch M, Watts J, Waugh S, Weeks S, Williams R, Willingham I, Wise EL, Wright V, Wyllie S, Young J, Amy Gaskin, Rowe W, Siveroni I, Johnson R. 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Combined epidemiological and genomic analysis of nosocomial SARS-CoV-2 infection early in the pandemic and the role of unidentified cases in transmission.

Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases

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Page AJ, Mather AE, Le Viet T, Meader EJ, Alikhan NF, Kay GL, de Oliveira Martins L, Aydin A, Baker DJ, Trotter AJ, Rudder S, Tedim AP, Kolyva A, Stanley R, Yasir M, Diaz M, Potter W, Stuart C, Meadows L, Bell A, Gutierrez AV, Thomson NM, Adriaenssens EM, Swingler T, Gilroy RAJ, Griffith L, Sethi DK, Aggarwal D, Brown CS, Davidson RK, Kingsley RA, Bedford L, Coupland LJ, Charles IG, Elumogo N, Wain J, Prakash R, Webber MA, Smith SJL, Chand M, Dervisevic S, O'Grady J. (2021)

Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management.

Microbial genomics

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Webber M., Yasir M., Turner K., Bastkowski S., Baker D., Page A., Telatin A., Savva G., Charles I.. (2020)

TraDIS-Xpress: a high-resolution whole-genome assay identifies novel mechanisms of triclosan action and resistance.

Genome Research, 30, 239-249

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