Merhi G, Trotter AJ, de Oliveira Martins L, Koweyes J, Le Viet T, Abou Naja, Al Buaini, Prosolek SJ, Alikhan NF, Lott M, Tohmeh T, Badran B, Jupp OJ, Gardner S, Felgate MW, Makin KA, Wilkinson JM, Stanley R, Sesay AK, Webber MA, Davidson RK, Ghosn N, Pallen M, Hasan H, Page AJ, Tokajian . (2022)

Replacement of the Alpha variant of SARS-CoV-2 by the Delta variant in Lebanon between April and June 2021.

Microbial genomics

Eales O, Walters CW, Wang H, Haw D, Ainslie KEC, Atchison CJ, Page AJ, Prosolek S, Trotter AJ, Le Viet, Alikhan N, Jackson LM, Ludden C, Ashby D, Donnelly CA, Cooke G, Barclay W, Ward H, Darzi A, Elliott P, Riley . (2022)

Characterising the persistence of RT-PCR positivity and incidence in a community survey of SARS-CoV-2 [version 1; peer review: awaiting peer review]

Wellcome open research

Trinh TM, Nguyen TT, Le Viet T, Nguyen TT, Ninh DT, Duong BH, Van Nguyen, Kesteman T, Pham LT, Rogier van. (2022)

Neisseria gonorrhoeae FC428 Subclone, Vietnam, 2019-2020.

Emerging infectious diseases

Vu Thi, Le Viet T, Nguyen Thi, Nguyen Thi, Nguyen Thi, Le Van, Chu Thi, Tran Huy, Penders J, Wertheim H, van Doorn. (2022)

Characterization of Genetic Elements Carrying mcr-1 Gene in Escherichia coli from the Community and Hospital Settings in Vietnam.

Microbiology spectrum

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Betteridge E, Bonfield J, Danesh J, Dorman MJ, Drury E, Farr BW, Foulser L, Goncalves S, Goodwin S, Gourtovaia M, Harrison EM, Jackson DK, Jamrozy D, Johnston I, Kane L, Kay S, Keatley JP, Kwiatkowski D, Langford CF, Lawniczak M, Letchford L, Livett R, Lo S, Martincorena I, McGuigan S, Nelson R, Palmer S, Park NR, Patel M, Prestwood L, Puethe C, Quail MA, Rajatileka S, Scott C, Shirley L, Sillitoe J, Chapman MHS, Thurston SAJ, Tonkin-Hill G, Weldon D, Rajan D, Bronner IF, Aigrain L, Redshaw NM, Lensing SV, Davies R, Whitwham A, Liddle J, Lewis K, Tovar-Corona JM, Leonard S, Durham J, Bassett AR, McCarthy S, Moll RJ, James K, Oliver K, Makunin A, Barrett J, Gunson R. 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Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission.

Nature communications

Baker DJ,Aydin A,Le Viet T,Kay GL,Rudder S,de Oliveira Martins L,Tedim AP,Kolyva A,Diaz M,Alikhan NF,Meadows L,Bell A,Gutierrez AV,Trotter AJ,Thomson NM,Gilroy R,Griffith L,Adriaenssens EM,Stanley R,Charles IG,Elumogo N,Wain J,Prakash R,Meader E,Mather AE,Webber M,Dervisevic S,Page AJ,O J. (2021)

CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes.

Genome medicine

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D,Freeman TM,Parker MD,Keeley AJ,Parsons PJ,Tucker RM,Brown R,Wyles M,Constantinidou C,Unnikrishnan M,Ott S,Cheng JKJ,Bridgewater HE,Frost LR,Taylor-Joyce G,Stark R,Baxter L,Alam MT,Brown PE,McClure PC,Chappell JG,Tsoleridis T,Ball J,Gramatopoulos D,Buck D,Todd JA,Green A,Trebes A,MacIntyre-Cockett G,de Cesare,Langford C,Alderton A,Amato R,Goncalves S,Jackson DK,Johnston I,Sillitoe J,Palmer S,Lawniczak M,Berriman M,Danesh J,Livett R,Shirley L,Farr B,Quail M,Thurston S,Park N,Betteridge E,Weldon D,Goodwin S,Nelson R,Beaver C,Letchford L,Jackson DA,Foulser L,McMinn L,Prestwood L,Kay S,Kane L,Dorman MJ,Martincorena I,Puethe C,Keatley JP,Tonkin-Hill G,Smith C,Jamrozy D,Beale MA,Patel M,Ariani C,Spencer-Chapman M,Drury E,Lo S,Rajatileka S,Scott C,James K,Buddenborg SK,Berger DJ,Patel G,Garcia-Casado MV,Dibling T,McGuigan S,Rogers HA,Hunter AD,Souster E,Neaverson AS. 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Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.

Cell

Sarwar M, Yasir M, Alikhan N, Afzal N, de Oliveira, Le Viet, Trotter A, Prosolek S, Kay G, Foster-Nyarko E, Rudder S, Baker D, Roman M, Webber M, Shafiq A, Shabir B, Akram J, Page A, Jahan . (2021)

SARS-CoV-2 variants of concern dominate in Lahore, Pakistan in April 2021

Microbial Genomics