Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020.

Alm E,Broberg EK,Connor T,Hodcroft EB,Komissarov AB,Maurer-Stroh S,Melidou A,Neher RA,O'Toole Á,Pereyaslov D,Beerenwinkel N,Posada-Céspedes S,Jablonski KP,Ferreira PF,Topolsky I,Avic-upanc T,Korva M,Poljak M,Zakotnik S,Zorec TM,Bragstad K,Hungnes O,Stene-Johansen K,Reusken C,Meijer A,Vennema H,Ruiz-Roldán L,Bracho MA,García-González N,Chiner-Oms Á,Cancino-Muñoz I,Comas I,Goig GA,Torres-Puente M,López MG,Martínez-Priego L,D'Auria G,Ruíz-Hueso P,Ferrús-Abad L,de Marco,Galan-Vendrell I,Carbó-Ramirez S,Ruiz-Rodriguez P,Coscollá M,Polackova K,Kramna L,Cinek O,Richter J,Krashias G,Tryfonos C,Bashiardes S,Koptides D,Christodoulou C,Bartolini B,Gruber CE,Di Caro,Castilletti C,Stefani F,Rimoldi SG,Romeri F,Salerno F,Polesello S,Nagy A,Jirincova H,Vecerova J,Novakova L,Cordey S,Murtskhvaladze M,Kotaria N,Schär T,Beisel C,Vugrek O,Rokic F,Trgovec-Greif L,Jurak I,Rukavina T,Sucic N,Schønning K,Karst SM,Kirkegaard RH,Michaelsen TY,Sørensen EA,Knutson S,Brandt J,Le-Quy V,Sørensen T,Petersen C,Pedersen MS,Larsen SL,Skov MN,Rasmussen M,Fonager J,Fomsgaard A,Maksyutov RA,Gavrilova EV,Pyankov OV,Bodnev SA,Tregubchak TV,Shvalov AN,Antonets DV,Resende PC,Goya S,Perrin A,Lee RT,Yadahalli S,Han AX,Russell CA,Schmutz S,Zaheri M,Kufner V,Huber M,Trkola A,Antwerpen M,Walter MC,van der,Gambaro F,Behillil S,Enouf V,Donati F,Ustinova M,Rovite V,Klovins J,Savicka O,Wienecke-Baldacchino AK,Ragimbeau C,Fournier G,Mossong J,Aberle SW,Haukland M,Enkirch T,Advani A,Karlberg ML,Lindsjö OK,Broddesson S,Sláviková M,Licková M,Klempa B,Staronová E,Tichá E,Szemes T,Rusnáková D,Stadler T,Quer J,Anton A,Andres C,Piñana M,Garcia-Cehic D,Pumarola T,Izopet J,Gioula G,Exindari M,Papa A,Chatzidimitriou D,Metallidis S,Pappa S,Macek M,Geryk J,Bro P,Briksí A,Hubácek P,Drevínek P,Zajac M,Kvapil P,Holub M,Kvapilová K,Novotný A,Kaný M,Klempt P,Vapalahti O,Smura T,Sironen T,Selhorst P,Anthony C,Ariën K,Simon-Loriere E,Rabalski L,Bienkowska-Szewczyk K,Borges V,Isidro J,Gomes JP,Guiomar R,Pechirra P,Costa 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Y,Williams CA,Roy S,Pandey S,Stockton J,Loman NJ,Poplawski R,Nicholls S,Rowe WPM,Khokhar F,Pinckert ML,Hosmillo M,Chaudhry Y,Caller LG,Davidson RK,Griffith L,Rambaut A,Jackson B,Colquhoun R,Hill V,Nichols J,Asamaphan P,Darby A,Jackson KA,Iturriza-Gomara M,Vamos EE,Green A,Aanensen D,Bonsall D,Buck D,Macintyre-Cockett G,de Cesare,Pybus O,Golubchik T,Scarlett G,Loveson KF,Robson SC,Beckett A,Lindsey B,Groves DC,Parsons PJ,Mchugh MP,Barnes JD,Manso CF,Grammatopoulos D,Menger KE,Harrison E,Gunson R,Peacock SJ,Gonzalez G,Carr M,Mihaela L,Popovici O,Brytting M,Bresner C,Fuller W,Workman T,Mentis AF,Kossyvakis A,Karamitros T,Pogka V,Kalliaropoulos A,Horefti E,Kontou A,Martinez-Gonzalez B,Labropoulou V,Voulgari-Kokota A,Evangelidou M,Bizta P,Belimezi M,Lambrechts L,Doymaz MZ,Yazici MK,Cetin NS,Karaaslan E,Kallio-Kokko H,Virtanen J,Suvanto M,Nguyen PT,Ellonen P,Hannula S,Kangas H,Sreenu VB,Burián K,Terhes G,Gombos K,Gyenesei A,Urbán P,Herczeg R,Jakab F,Kemenesi G,Tóth GE,Somogyi B,Zana 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(2020)

Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin

We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.

Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin

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