Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes.
Carey ME, Dyson ZA, Ingle DJ, Amir A, Aworh MK, Chattaway MA, Chew KL, Crump JA, Feasey NA, Howden BP, Keddy KH, Maes M, Parry CM, Van Puyvelde, Webb HE, Afolayan AO, Alexander AP, Anandan S, Andrews JR, Ashton PM, Basnyat B, Bavdekar A, Bogoch II, Clemens JD, da Silva, De A, de Ligt, Diaz Guevara, Dolecek C, Dutta S, Ehlers MM, Francois Watkins, Garrett DO, Godbole G, Gordon MA, Greenhill AR, Griffin C, Gupta M, Hendriksen RS, Heyderman RS, Hooda Y, Hormazabal JC, Ikhimiukor OO, Iqbal J, Jacob JJ, Jenkins C, Jinka DR, John J, Kang G, Kanteh A, Kapil A, Karkey A, Kariuki S, Kingsley R, Koshy RM, Lauer AC, Levine MM, Lingegowda RK, Luby SP, Mackenzie GA, Mashe T, Msefula C, Mutreja A, Nagaraj G, Nagaraj S, Nair S, Naseri TK, Nimarota-Brown S, Njamkepo E, Okeke IN, Perumal SPB, Pollard AJ, Pragasam AK, Qadri F, Qamar FN, Rahman SIA, Rambocus SD, Rasko DA, Ray P, Robins-Browne R, Rongsen-Chandola T, Rutanga JP, Saha SK, Saha S, Saigal K, Sajib MSI, Seidman JC, Shakya J, Shamanna V, Shastri J, Shrestha R, Sia S, Sikorski MJ, Singh A, Smith AM, Tagg KA, Tamrakar D, Tanmoy AM, Thomas M, Thomas MS, Thomsen R, Thomson NR, Tupua S, Vaidya K, Valcanis M, Veeraraghavan B, Weill FX, Wright J, Dougan G, Argimón S, Keane JA, Aanensen DM, Baker S, Holt KE, Aaby P, Abbas A, Ahmed N, Andleeb S, Aseffa A, Baker KS, Bentsi-Enchill A, Breiman RF, Britto C, Campos J, Chen CJ, Chiou CS, Davong V, Faiz A, Gul D, Hasan R, Hatta M, Ikram A, Isaia L, Jacobs J, Kariuki S, Khokhar F, Klemm E, Kuijpers LMF, Langridge G, Lim K, Lunguya O, Luquero F, MacLennan CA, Marks F, Morita M, Muchimba M, Mwansa JCL, Mwape K, Mwenda JM, Nash J, Neuzil KM, Newton P, Obaro S, Octavia S, Ohnishi M, Owusu M, Owusu-Dabo E, Park SE, Parkhill J, Pham DT, Phoba MF, Pickard DJ, Rakotozandrindrainy R, Ramon-Pardo P, Rasheed F, Rokney A, Rupali P, Sah R, Shakoor S, Simuyand M, Sooka A, Stanaway JD, Steele AD, Tack B, Tall A, Taneja N, Teferi M, Tessema S, Thilliez G, Turner P, Ussher JE, Villanueva AM, Weimer B, Wong VK, Founou R. (2023)
eLife
The Global Typhoid Genomics Consortium was established to bring together the typhoid research community to aggregate and analyse Salmonella enterica serovar Typhi (Typhi) genomic data to inform public health action. This analysis, which marks 22 years since the publication of the first Typhi genome, represents the largest Typhi genome sequence collection to date (n=13,000).
eLife
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