The Quadram Institute is looking to reduce the problems caused by microbes in the food chain by delivering an enhanced understanding of the ecology, evolution and survival strategies of pathogens in the food chain, including the drivers of antimicrobial resistance, to improve human health.

Microbes in the food chain represent a major global challenge to health and the economy, through foodborne infections and through their contribution to the problem of antimicrobial resistance.

Working in collaboration with other BBSRC-supported institutes, we are harnessing the latest genomic technologies to track the emergence, evolution and spread of foodborne pathogens in the food chain.

Our research focusses on E. coli, Salmonella, Listeria and Campylobacter, as the major causes of foodborne illness.

Our approach is to gather isolates from across the whole of the food chain, from soil, water, farms, animals, processing factories and humans, to get the fullest possible picture of the genomic epidemiology of these bacteria. Whilst many human isolates have been catalogued, comparatively few have been taken from the food chain environment, so completing this dataset will allow us to identify where foodborne pathogens arise from, and which are the major locations for bacterial communities that potentially could impact health.

Comparative genomics will allow us to identify what drives the emergence of antimicrobial resistance as well as other survival strategies, such as the formation of biofilms that resist cleaning, Salmonella’s ability to colonise plants and animals, and E. coli’s evasion of host defences.

The interdisciplinary team of researchers within the Quadram Institute is at the cutting edge of microbial cell biology, genomics, metagenomics, modelling and bioinformatics. Working strategically with partners on the Norwich Research Park and elsewhere, we will be developing novel approaches to sequencing and genomic analysis to better understand the microbiology of the food chain. This will allow us to identify new intervention strategies to stop pathogen spread in the food chain, either working through our ongoing collaborations with food production companies, or through novel techniques, potentially developed through bioprospecting for useful enzymes or probiotic bacterial strains.

Targeting microbes in the food chain

Alison Mather

Epidemiology, genomics and antimicrobial resistance of bacteria

Andrew Page

Informatics and bioinformatics support

Narbad group

Arjan Narbad

Translational microbiome

Cynthia Whitchurch

Bacterial lifestyles

Gemma Langridge

Bacterial niche adaptation

John Wain

Bacterial diversity and tropical infections

Pallen group

Mark Pallen

Bacterial Genomics and Metagenomics

Webber group

Mark Webber

Investigating the evolution of antimicrobial resistance

Web banner yellow and white dishes on a green background. Plastic utensils. Ecological problem. Kitchen. Culinary blog.

Matthew Gilmour

Listeria and other invasive pathogens

Nicol Janecko

Campylobacter in the food chain

Microscopy image of Salmonella with a genomic map overlaid

Rob Kingsley

Pathogen variation

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